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So if you change the blank portal modules.png it doesnt change ingame? with the portal frames, controllers etc. I could only change how it looks when you hold it in your hand , they looked all the same when they were placed, exept for the dialling device, had some problems with that.If you haven't figured out how to get it to work yet I could try to find out how it works or did I missunderstand something?
I think that you have the blankPortalModule.png where you have one "Background" for the other modules,then you put the diffrent portal module middle parts(the diffrent colors in the portalModule_0-7.png's (I hope you get what I mean)
I hope that this was your problem (not sure If I understood your problem right) and that I could solve it but probably not xD